2021
- Novel Drivers of Virulence in Clostridioides difficile Identified via Context-Specific Metabolic Network Analysis
- Multidimensional Clinical Surveillance of Pseudomonas aeruginosa Reveals Complex Relationships between Isolate Source, Morphology, and Antimicrobial Resistance
- Protection from Lethal Clostridioides difficile Infection via Intraspecies Competition for Cogerminant
2020
- Clostridioides difficile: Sometimes It Pays To Be Difficult
- Ten simple rules to increase computational skills among biologists with Code Clubs
- Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments
- Lewis Blood Group Antigens are Associated with Altered Susceptibility to Shigellosis
2019
- The Gut Microbiota Is Associated with Clearance of Clostridium difficile Infection Independent of Adaptive Immunity
- Functional Anabolic Network Analysis of Human-associated Lactobacillus Strains